3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10357

Details:

PFam ID : PF10357

PFam Domain Description : Domain of Kin17 curved DNA-binding protein

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 119

Average sequence length: 125.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10357	A5E664_LODEL_55_198	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10357	A5E664_LODEL_55_198	100

Sequence based PCA Plot of the family - PF10357 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=40 Length=22

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay