3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10354

Details:

PFam ID : PF10354

PFam Domain Description : Domain of unknown function (DUF2431)

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 234

Average sequence length: 162.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10354	D3ZEA2_RAT_21_135	93.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10354	Q55NB5_CRYNE_89_337	100

Sequence based PCA Plot of the family - PF10354 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=57 Length=8
Motif2 Start=81 Length=8
Motif3 Start=148 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay