3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10351

Details:

PFam ID : PF10351

PFam Domain Description : Golgi-body localisation protein domain

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 148

Average sequence length: 414.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10351	D3BQV0_POLPA_842_1013	60.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10351	B6JYA3_SCHJY_2074_2524	100

Sequence based PCA Plot of the family - PF10351 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=8
Motif2 Start=579 Length=8
Motif3 Start=4 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay