3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10349

Details:

PFam ID : PF10349

PFam Domain Description : WW-domain ligand protein

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 105

Average sequence length: 106.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10349	B3RMF7_TRIAD_103_224	70.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10349	Q5DEM4_SCHJA_97_204	93.2

Sequence based PCA Plot of the family - PF10349 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=62 Length=8
Motif2 Start=12 Length=8
Motif3 Start=1 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay