3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10346

Details:

PFam ID : PF10346

PFam Domain Description : Conidiation protein 6

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 112

Average sequence length: 35.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10346	B8PLA1_POSPM_1_26	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10346	A8P198_COPC7_84_138	96.3

Sequence based PCA Plot of the family - PF10346 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=11
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay