3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10345

Details:

PFam ID : PF10345

PFam Domain Description : Cohesin loading factor

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 104

Average sequence length: 458.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10345	B7Q4I8_IXOSC_34_344	86.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10345	E5A0I1_LEPMC_289_902	97.0

Sequence based PCA Plot of the family - PF10345 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay