3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10341

Details:

PFam ID : PF10341

PFam Domain Description : Telomerase holoenzyme, Est3 subunit

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 28

Average sequence length: 135.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10341	C5DLF3_LACTC_20_96	36.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10341	C5FFU4_ARTOC_6_156	96.2

Sequence based PCA Plot of the family - PF10341 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay