3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10339

Details:

PFam ID : PF10339

PFam Domain Description : Velum formation protein

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 5

Average sequence length: 161.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10339	YI75_SCHPO_6_204	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10339	YI75_SCHPO_6_204	100

Sequence based PCA Plot of the family - PF10339 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay