3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10333

Details:

PFam ID : PF10333

PFam Domain Description : GPI-Mannosyltransferase II co-activator

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 18

Average sequence length: 167.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10333	Q6FP82_CANGA_8_188	91.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10333	Q754M6_ASHGO_26_205	100

Sequence based PCA Plot of the family - PF10333 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=180 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay