3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10312

Details:

PFam ID : PF10312

PFam Domain Description : Conserved mid region of cactin

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 116

Average sequence length: 175.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10312	B7G2X8_PHATC_212_436	95.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10312	B7G2X8_PHATC_212_436	100

Sequence based PCA Plot of the family - PF10312 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=145 Length=8
Motif2 Start=186 Length=11
Motif3 Start=31 Length=11
Motif4 Start=172 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay