3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10311

Details:

PFam ID : PF10311

PFam Domain Description : Increased loss of mitochondrial DNA protein 1

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 54

Average sequence length: 176.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10311	C4JXR8_UNCRE_4_210	43.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10311	B6JXI6_SCHJY_3_145	100

Sequence based PCA Plot of the family - PF10311 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=130 Length=8
Motif4 Start=120 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay