3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10307

Details:

PFam ID : PF10307

PFam Domain Description : Hypothetical protein (DUF2410)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 50

Average sequence length: 187.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10307	C9SDY7_VERA1_1_92	94.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10307	Q6FS99_CANGA_45_256	100

Sequence based PCA Plot of the family - PF10307 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=1 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay