3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10297

Details:

PFam ID : PF10297

PFam Domain Description : Minimal binding motif of Hap4 for binding to Hap2/3/5

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 31

Average sequence length: 16.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10297	C4QZ57_PICPG_18_33	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10297	C5DLE8_LACTC_42_58	100

Sequence based PCA Plot of the family - PF10297 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay