3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10295

Details:

PFam ID : PF10295

PFam Domain Description : Uncharacterised protein (DUF2406)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 54

Average sequence length: 67.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10295	A1CJW5_ASPCL_1_40	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10295	Q5KIM0_CRYNE_123_249	100

Sequence based PCA Plot of the family - PF10295 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay