3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10293

Details:

PFam ID : PF10293

PFam Domain Description : Domain of unknown function (DUF2405)

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 98

Average sequence length: 156.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10293	A8XWF7_CAEBR_935_1081	96.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10293	Q6C404_YARLI_939_1115	100

Sequence based PCA Plot of the family - PF10293 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=124 Length=8
Motif3 Start=53 Length=8
Motif4 Start=107 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay