3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10291

Details:

PFam ID : PF10291

PFam Domain Description : Muniscin C-terminal mu homology domain

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 110

Average sequence length: 252.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10291	C4Q4V2_SCHMA_1011_1224	73.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10291	D5GF20_TUBMM_534_827	100

Sequence based PCA Plot of the family - PF10291 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=37 Length=8
Motif2 Start=3 Length=17
Motif3 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay