3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10290

Details:

PFam ID : PF10290

PFam Domain Description : Glycine-rich protein domain (DUF2403)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 77

Average sequence length: 62.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10290	D1ZJM2_SORMK_88_127	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10290	D8LG92_ECTSI_367_438	100

Sequence based PCA Plot of the family - PF10290 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=5 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay