3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10282

Details:

PFam ID : PF10282

PFam Domain Description : Lactonase, 7-bladed beta-propeller

Number of Sequence in 50% Dataset : 573

Number of Sequence in Full Dataset : 1392

Average sequence length: 237.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10282	F0TD29_9PROT_297_417	90.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10282	E3KJH2_PUCGT_78_218	99.7

Sequence based PCA Plot of the family - PF10282 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=8
Motif2 Start=358 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay