3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10278

Details:

PFam ID : PF10278

PFam Domain Description : Mediator of RNA pol II transcription subunit 19

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 36

Average sequence length: 149.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10278	F0WKY4_9STRA_17_183	73.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10278	B5DM81_DROPS_35_245	100

Sequence based PCA Plot of the family - PF10278 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=45 Length=8
Motif4 Start=89 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay