3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10277

Details:

PFam ID : PF10277

PFam Domain Description : Frag1/DRAM/Sfk1 family

Number of Sequence in 50% Dataset : 173

Number of Sequence in Full Dataset : 380

Average sequence length: 202.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10277	Q4SKY8_TETNG_10_185	76.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10277	E4XHS1_OIKDI_7_260	96.3

Sequence based PCA Plot of the family - PF10277 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=245 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay