3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10270

Details:

PFam ID : PF10270

PFam Domain Description : Membrane magnesium transporter

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 122

Average sequence length: 97.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10270	A7TNN7_VANPO_8_70	17.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10270	F0V726_NEOCA_8_77	100

Sequence based PCA Plot of the family - PF10270 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=18
Motif2 Start=20 Length=8
Motif3 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay