3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10269

Details:

PFam ID : PF10269

PFam Domain Description : Transmembrane Fragile-X-F protein

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 146

Average sequence length: 154.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10269	B7PEH6_IXOSC_3_77	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10269	B7ZY40_MAIZE_56_237	100

Sequence based PCA Plot of the family - PF10269 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=3 Length=17
Motif3 Start=75 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay