3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10266

Details:

PFam ID : PF10266

PFam Domain Description : Hereditary spastic paraplegia protein strumpellin

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 79

Average sequence length: 695.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10266	E1FRP3_LOALO_21_190	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10266	A7T1T2_NEMVE_1_625	100

Sequence based PCA Plot of the family - PF10266 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=36 Length=8
Motif2 Start=18 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay