3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10256

Details:

PFam ID : PF10256

PFam Domain Description : Golgin subfamily A member 7/ERF4 family

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 162

Average sequence length: 118.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10256	Q54V74_DICDI_4_190	86.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10256	D0N1Q5_PHYIT_35_151	98.7

Sequence based PCA Plot of the family - PF10256 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay