3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10253

Details:

PFam ID : PF10253

PFam Domain Description : Mitotic checkpoint protein PRCC_Cterm

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 75

Average sequence length: 39.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10253	A9UY48_MONBE_400_440	15.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10253	E4Z027_OIKDI_368_408	98.6

Sequence based PCA Plot of the family - PF10253 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=11
Motif2 Start=21 Length=8
Motif3 Start=12 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay