3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10250

Details:

PFam ID : PF10250

PFam Domain Description : GDP-fucose protein O-fucosyltransferase

Number of Sequence in 50% Dataset : 137

Number of Sequence in Full Dataset : 508

Average sequence length: 297.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10250	Q0IVE4_ORYSJ_1_55	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10250	E4WX35_OIKDI_96_456	98.2

Sequence based PCA Plot of the family - PF10250 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=18
Motif2 Start=14 Length=8
Motif3 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay