3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10249

Details:

PFam ID : PF10249

PFam Domain Description : NADH-ubiquinone oxidoreductase subunit 10

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 57

Average sequence length: 105.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10249	Q0IVE4_ORYSJ_1_55	21.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10249	E9CIV2_9EUKA_6_102	100

Sequence based PCA Plot of the family - PF10249 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=1 Length=8
Motif4 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay