3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10246

Details:

PFam ID : PF10246

PFam Domain Description : Mitochondrial ribosomal protein MRP-S35

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 40

Average sequence length: 97.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10246	E3WP03_ANODA_105_157	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10246	E4X5C0_OIKDI_54_166	100

Sequence based PCA Plot of the family - PF10246 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=11 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay