3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10245

Details:

PFam ID : PF10245

PFam Domain Description : Mitochondrial 28S ribosomal protein S22

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 46

Average sequence length: 215.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10245	F2TY52_9EUKA_117_329	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10245	Q5DHY4_SCHJA_30_293	100

Sequence based PCA Plot of the family - PF10245 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=103 Length=8
Motif3 Start=120 Length=8
Motif4 Start=202 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay