3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10244

Details:

PFam ID : PF10244

PFam Domain Description : Mitochondrial ribosomal subunit

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 36

Average sequence length: 91.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10244	E3NPV8_CAERE_70_170	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10244	E3NPV8_CAERE_70_170	100

Sequence based PCA Plot of the family - PF10244 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=11
Motif2 Start=83 Length=8
Motif3 Start=17 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay