3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10243

Details:

PFam ID : PF10243

PFam Domain Description : Microtubule-binding protein MIP-T3

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 129

Average sequence length: 287.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10243	A0BFP3_PARTE_48_171	50.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10243	A4HC10_LEIBR_238_483	94.5

Sequence based PCA Plot of the family - PF10243 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=368 Length=8
Motif2 Start=286 Length=8
Motif3 Start=438 Length=8
Motif4 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay