3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10242

Details:

PFam ID : PF10242

PFam Domain Description : Lipoma HMGIC fusion partner-like protein

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 117

Average sequence length: 159.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10242	A9V8T9_MONBE_10_181	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10242	D3PJ72_9MAXI_9_224	99.1

Sequence based PCA Plot of the family - PF10242 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay