3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10238

Details:

PFam ID : PF10238

PFam Domain Description : E2F-associated phosphoprotein

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 79

Average sequence length: 128.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10238	B8C4L1_THAPS_101_320	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10238	B8C4L1_THAPS_101_320	100

Sequence based PCA Plot of the family - PF10238 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=31 Length=8
Motif2 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay