3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10235

Details:

PFam ID : PF10235

PFam Domain Description : Microtubule-associated protein CRIPT

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 78

Average sequence length: 86.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10235	D8LZB5_BLAHO_11_102	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10235	D8LZB5_BLAHO_11_102	98.7

Sequence based PCA Plot of the family - PF10235 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay