3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10234

Details:

PFam ID : PF10234

PFam Domain Description : Clusterin-associated protein-1

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 77

Average sequence length: 217.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10234	B4LA63_DROMO_215_273	75.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10234	E5S4W1_TRISP_2_302	100

Sequence based PCA Plot of the family - PF10234 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=49 Length=8
Motif2 Start=4 Length=8
Motif3 Start=266 Length=8
Motif4 Start=24 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay