3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10231

Details:

PFam ID : PF10231

PFam Domain Description : Uncharacterised conserved protein (DUF2315)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 45

Average sequence length: 112.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10231	B4M336_DROVI_1_80	94.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10231	C3Z4T1_BRAFL_6_138	100

Sequence based PCA Plot of the family - PF10231 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay