3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10229

Details:

PFam ID : PF10229

PFam Domain Description : Uncharacterized conserved protein (DUF2246)

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 84

Average sequence length: 196.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10229	Q4STQ1_TETNG_20_283	92.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10229	Q9XWC9_CAEEL_1_275	100

Sequence based PCA Plot of the family - PF10229 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=14
Motif2 Start=155 Length=8
Motif3 Start=169 Length=8
Motif4 Start=115 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay