3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10228

Details:

PFam ID : PF10228

PFam Domain Description : Uncharacterised conserved protein (DUF2228)

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 55

Average sequence length: 206.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10228	D6TYS8_9CHLR_12_255	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10228	E2BAP3_9HYME_28_280	100

Sequence based PCA Plot of the family - PF10228 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay