3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10225

Details:

PFam ID : PF10225

PFam Domain Description : Uncharacterized conserved protein (DUF2215)

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 111

Average sequence length: 212.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10225	Q4TCA7_TETNG_145_201	70.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10225	A7RHQ7_NEMVE_147_403	99.0

Sequence based PCA Plot of the family - PF10225 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=198 Length=8
Motif3 Start=220 Length=8
Motif4 Start=240 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay