3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10222

Details:

PFam ID : PF10222

PFam Domain Description : Uncharacterized conserved protein (DUF2152)

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 53

Average sequence length: 364.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10222	C4Q341_SCHMA_1002_1225	70.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10222	E9GU12_DAPPU_19_627	96.1

Sequence based PCA Plot of the family - PF10222 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=83 Length=8
Motif3 Start=284 Length=8
Motif4 Start=209 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay