3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10221

Details:

PFam ID : PF10221

PFam Domain Description : Cell cycle and development regulator

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 59

Average sequence length: 424.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10221	C4QIA5_SCHMA_92_369	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10221	M89BB_DROWI_570_655	100

Sequence based PCA Plot of the family - PF10221 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=573 Length=8
Motif2 Start=55 Length=11
Motif3 Start=282 Length=8
Motif4 Start=491 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay