3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10220

Details:

PFam ID : PF10220

PFam Domain Description : Uncharacterized conserved protein (DUF2146)

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 108

Average sequence length: 369.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10220	B9N873_POPTR_7_124	70.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10220	E0VIL6_PEDHC_128_310	100

Sequence based PCA Plot of the family - PF10220 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=83 Length=8
Motif4 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay