3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10218

Details:

PFam ID : PF10218

PFam Domain Description : Uncharacterized conserved protein (DUF2054)

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 63

Average sequence length: 113.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10218	C7J8Z3_ORYSJ_5_91	86.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10218	D3B8I6_POLPA_123_277	100

Sequence based PCA Plot of the family - PF10218 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=19
Motif2 Start=22 Length=8
Motif3 Start=60 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay