3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10216

Details:

PFam ID : PF10216

PFam Domain Description : CO2 hydration protein (ChpXY)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 55

Average sequence length: 355.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10216	A6QX96_AJECN_367_639	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10216	Q7NHA7_GLOVI_76_419	100

Sequence based PCA Plot of the family - PF10216 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=3 Length=11
Motif2 Start=48 Length=8
Motif3 Start=80 Length=8
Motif4 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay