3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10215

Details:

PFam ID : PF10215

PFam Domain Description : Oligosaccaryltransferase

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 59

Average sequence length: 33.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10215	A6QX96_AJECN_367_639	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10215	D0MR75_PHYIT_39_71	100

Sequence based PCA Plot of the family - PF10215 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay