3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10213

Details:

PFam ID : PF10213

PFam Domain Description : Mitochondrial ribosomal subunit protein

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 144

Average sequence length: 118.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10213	E9GU69_DAPPU_33_75	22.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10213	E3L0S2_PUCGT_131_291	100

Sequence based PCA Plot of the family - PF10213 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay