3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10210

Details:

PFam ID : PF10210

PFam Domain Description : Mitochondrial 28S ribosomal protein S32

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 44

Average sequence length: 89.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10210	B3RUS7_TRIAD_8_84	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10210	C3XYI9_BRAFL_32_129	100

Sequence based PCA Plot of the family - PF10210 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=18 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay