3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10209

Details:

PFam ID : PF10209

PFam Domain Description : Uncharacterized conserved protein (DUF2340)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 58

Average sequence length: 111.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10209	A9V104_MONBE_35_86	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10209	C1BN97_9MAXI_5_125	100

Sequence based PCA Plot of the family - PF10209 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=73 Length=8
Motif2 Start=98 Length=8
Motif3 Start=110 Length=8
Motif4 Start=3 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay