3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10204

Details:

PFam ID : PF10204

PFam Domain Description : Dual oxidase maturation factor

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 51

Average sequence length: 214.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10204	E4YDE5_OIKDI_9_286	68

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10204	B7Q5C6_IXOSC_21_105	100

Sequence based PCA Plot of the family - PF10204 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay