3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10200

Details:

PFam ID : PF10200

PFam Domain Description : NADH:ubiquinone oxidoreductase, NDUFS5-15kDa

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 72

Average sequence length: 78.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10200	B4MTU9_DROWI_12_90	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10200	B4MTU9_DROWI_12_90	100

Sequence based PCA Plot of the family - PF10200 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay